J3_8C94_009

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8C94|1|A|U|34, 8C94|1|A|U|448, 8C94|1|A|C|455, 8C94|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C94_009 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1416

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8C94|1|A|C|32
8C94|1|A|C|33
8C94|1|A|U|34
8C94|1|A|G|35
*
8C94|1|A|C|445
8C94|1|A|G|446
8C94|1|A|A|447
8C94|1|A|U|448
8C94|1|A|A|449
8C94|1|A|G|450
8C94|1|A|U|451
8C94|1|A|G|452
8C94|1|A|A|453
8C94|1|A|A|454
8C94|1|A|C|455
8C94|1|A|C|456
8C94|1|A|A|457
8C94|1|A|G|458
8C94|1|A|U|459
8C94|1|A|A|460
8C94|1|A|C|461
*
8C94|1|A|G|468
8C94|1|A|G|469
8C94|1|A|A|470
8C94|1|A|A|471
8C94|1|A|A|472
8C94|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20