J3_8C95_005

3D structure

PDB id

8C95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.92 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8C95|1|A|U|34, 8C95|1|A|U|448, 8C95|1|A|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C95_005 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1477

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8C95|1|A|C|32
8C95|1|A|C|33
8C95|1|A|U|34
8C95|1|A|G|35
*
8C95|1|A|C|445
8C95|1|A|G|446
8C95|1|A|A|447
8C95|1|A|U|448
8C95|1|A|A|449
8C95|1|A|G|450
8C95|1|A|U|451
8C95|1|A|G|452
8C95|1|A|A|453
8C95|1|A|A|454
8C95|1|A|C|455
8C95|1|A|C|456
8C95|1|A|A|457
8C95|1|A|G|458
8C95|1|A|U|459
8C95|1|A|A|460
8C95|1|A|C|461
*
8C95|1|A|G|468
8C95|1|A|G|469
8C95|1|A|A|470
8C95|1|A|A|471
8C95|1|A|A|472
8C95|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20