J3_8C96_006

3D structure

PDB id

8C96 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.43 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8C96|1|A|U|34, 8C96|1|A|U|448, 8C96|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C96_006 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1466

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8C96|1|A|C|32
8C96|1|A|C|33
8C96|1|A|U|34
8C96|1|A|G|35
*
8C96|1|A|C|445
8C96|1|A|G|446
8C96|1|A|A|447
8C96|1|A|U|448
8C96|1|A|A|449
8C96|1|A|G|450
8C96|1|A|U|451
8C96|1|A|G|452
8C96|1|A|A|453
8C96|1|A|A|454
8C96|1|A|C|455
8C96|1|A|C|456
8C96|1|A|A|457
8C96|1|A|G|458
8C96|1|A|U|459
8C96|1|A|A|460
8C96|1|A|C|461
*
8C96|1|A|G|468
8C96|1|A|G|469
8C96|1|A|A|470
8C96|1|A|A|471
8C96|1|A|A|472
8C96|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20