J3_8C97_010

3D structure

PDB id

8C97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.07 Å

Loop

Sequence

GGGGACG*CC*GAAAAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C97_010 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.5948

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

8C97|1|A|G|1423
8C97|1|A|G|1424
8C97|1|A|G|1425
8C97|1|A|G|1426
8C97|1|A|A|1427
8C97|1|A|C|1428
8C97|1|A|G|1429
*
8C97|1|A|C|1564
8C97|1|A|C|1565
*
8C97|1|A|G|1568
8C97|1|A|A|1569
8C97|1|A|A|1570
8C97|1|A|A|1571
8C97|1|A|A|1572
8C97|1|A|G|1573
8C97|1|A|C|1574
8C97|1|A|C|1575

Current chains

Chain A

23S rRNA

Nearby chains