J3_8C9A_001

3D structure

PDB id

8C9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.86 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C9A_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.2066

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8C9A|1|A|G|30
8C9A|1|A|C|31
*
8C9A|1|A|G|474
8C9A|1|A|C|475
8C9A|1|A|G|476
8C9A|1|A|A|477
8C9A|1|A|A|478
8C9A|1|A|A|479
8C9A|1|A|A|480
8C9A|1|A|G|481
*
8C9A|1|A|C|509
8C9A|1|A|C|510

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24