J3_8C9A_003

3D structure

PDB id

8C9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.86 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8C9A|1|A|U|34, 8C9A|1|A|U|448, 8C9A|1|A|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C9A_003 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1678

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8C9A|1|A|C|32
8C9A|1|A|C|33
8C9A|1|A|U|34
8C9A|1|A|G|35
*
8C9A|1|A|C|445
8C9A|1|A|G|446
8C9A|1|A|A|447
8C9A|1|A|U|448
8C9A|1|A|A|449
8C9A|1|A|G|450
8C9A|1|A|U|451
8C9A|1|A|G|452
8C9A|1|A|A|453
8C9A|1|A|A|454
8C9A|1|A|C|455
8C9A|1|A|C|456
8C9A|1|A|A|457
8C9A|1|A|G|458
8C9A|1|A|U|459
8C9A|1|A|A|460
8C9A|1|A|C|461
*
8C9A|1|A|G|468
8C9A|1|A|G|469
8C9A|1|A|A|470
8C9A|1|A|A|471
8C9A|1|A|A|472
8C9A|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23