J3_8C9B_002

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

8C9B|1|A|U|34, 8C9B|1|A|U|448, 8C9B|1|A|C|456

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C9B_002 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.4656

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8C9B|1|A|C|33
8C9B|1|A|U|34
8C9B|1|A|G|35
*
8C9B|1|A|C|445
8C9B|1|A|G|446
8C9B|1|A|A|447
8C9B|1|A|U|448
8C9B|1|A|A|449
8C9B|1|A|G|450
8C9B|1|A|U|451
8C9B|1|A|G|452
8C9B|1|A|A|453
8C9B|1|A|A|454
8C9B|1|A|C|455
8C9B|1|A|C|456
8C9B|1|A|A|457
8C9B|1|A|G|458
8C9B|1|A|U|459
8C9B|1|A|A|460
8C9B|1|A|C|461
*
8C9B|1|A|G|468
8C9B|1|A|G|469
8C9B|1|A|A|470
8C9B|1|A|A|471
8C9B|1|A|A|472
8C9B|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34