J3_8C9C_003

3D structure

PDB id

8C9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

6.62 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8C9C|1|A|U|34, 8C9C|1|A|U|448, 8C9C|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C9C_003 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1938

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8C9C|1|A|C|32
8C9C|1|A|C|33
8C9C|1|A|U|34
8C9C|1|A|G|35
*
8C9C|1|A|C|445
8C9C|1|A|G|446
8C9C|1|A|A|447
8C9C|1|A|U|448
8C9C|1|A|A|449
8C9C|1|A|G|450
8C9C|1|A|U|451
8C9C|1|A|G|452
8C9C|1|A|A|453
8C9C|1|A|A|454
8C9C|1|A|C|455
8C9C|1|A|C|456
8C9C|1|A|A|457
8C9C|1|A|G|458
8C9C|1|A|U|459
8C9C|1|A|A|460
8C9C|1|A|C|461
*
8C9C|1|A|G|468
8C9C|1|A|G|469
8C9C|1|A|A|470
8C9C|1|A|A|471
8C9C|1|A|A|472
8C9C|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains