J3_8CAH_001

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CAH_001 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.0787

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

8CAH|1|2|A|760
8CAH|1|2|G|761
8CAH|1|2|A|762
8CAH|1|2|G|763
*
8CAH|1|2|C|773
8CAH|1|2|A|774
8CAH|1|2|G|775
*
8CAH|1|2|U|785
8CAH|1|2|C|786
8CAH|1|2|G|787
8CAH|1|2|A|788
8CAH|1|2|A|789
8CAH|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-B

Chain W

40S ribosomal protein S9-A

Chain d

40S ribosomal protein S24-A