J3_8CAH_004

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CAH_004 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2057

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CAH|1|2|C|1161
8CAH|1|2|C|1162
8CAH|1|2|A|1163
8CAH|1|2|G|1164
*
8CAH|1|2|C|1581
8CAH|1|2|U|1582
8CAH|1|2|A|1583
8CAH|1|2|G|1584
8CAH|1|2|U|1585
8CAH|1|2|A|1586
8CAH|1|2|A|1587
*
8CAH|1|2|U|1609
8CAH|1|2|G|1610
8CAH|1|2|A|1611
8CAH|1|2|U|1612
8CAH|1|2|U|1613
8CAH|1|2|A|1614
8CAH|1|2|C|1615
8CAH|1|2|G|1616

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S5

Chain F

40S ribosomal protein S16-A

Chain h

40S ribosomal protein S28-A