J3_8CAH_007
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8CAH|1|2|A|1217, 8CAH|1|2|G|1445, 8CAH|1|2|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CAH_007 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.0967
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CAH|1|2|C|1215
8CAH|1|2|C|1216
8CAH|1|2|A|1217
8CAH|1|2|G|1218
8CAH|1|2|A|1219
8CAH|1|2|C|1220
*
8CAH|1|2|G|1263
8CAH|1|2|G|1264
8CAH|1|2|G|1265
8CAH|1|2|U|1266
8CAH|1|2|G|1267
*
8CAH|1|2|U|1442
8CAH|1|2|U|1443
8CAH|1|2|A|1444
8CAH|1|2|G|1445
8CAH|1|2|A|1446
8CAH|1|2|C|1447
8CAH|1|2|G|1448
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain C
- 40S ribosomal protein S10-A
- Chain M
- RPS29A isoform 1
- Chain N
- 40S ribosomal protein S31
- Chain y
- Eukaryotic translation initiation factor 3 subunit J
- Chain z
- Eukaryotic translation initiation factor 3 subunit J
Coloring options: