J3_8CAM_001

3D structure

PDB id

8CAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evernimicin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.86 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8CAM|1|a|U|686, 8CAM|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CAM_001 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.3154

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8CAM|1|a|U|683
8CAM|1|a|G|684
8CAM|1|a|A|685
8CAM|1|a|U|686
8CAM|1|a|C|687
8CAM|1|a|U|688
8CAM|1|a|A|689
*
8CAM|1|a|U|773
8CAM|1|a|G|774
8CAM|1|a|G|775
*
8CAM|1|a|C|791
8CAM|1|a|A|792
8CAM|1|a|A|793
8CAM|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2