J3_8CAS_007

3D structure

PDB id

8CAS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 48S initiation complex (partial)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8CAS|1|2|A|1217, 8CAS|1|2|G|1445, 8CAS|1|2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CAS_007 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1349

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8CAS|1|2|C|1215
8CAS|1|2|C|1216
8CAS|1|2|A|1217
8CAS|1|2|G|1218
8CAS|1|2|A|1219
8CAS|1|2|C|1220
*
8CAS|1|2|G|1263
8CAS|1|2|G|1264
8CAS|1|2|G|1265
8CAS|1|2|U|1266
8CAS|1|2|G|1267
*
8CAS|1|2|U|1442
8CAS|1|2|U|1443
8CAS|1|2|A|1444
8CAS|1|2|G|1445
8CAS|1|2|A|1446
8CAS|1|2|C|1447
8CAS|1|2|G|1448

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S10-A

Chain N

RPS29A isoform 1

Chain O

40S ribosomal protein S31