J3_8CBJ_005

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CBJ_005 not in the Motif Atlas

Geometric match to J3_8C3A_039

Geometric discrepancy: 0.1052

The information below is about J3_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.3

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8CBJ|1|2|U|1168
8CBJ|1|2|G|1169
8CBJ|1|2|G|1170
8CBJ|1|2|A|1171
*
8CBJ|1|2|U|1468
8CBJ|1|2|A|1469
8CBJ|1|2|C|1470
*
8CBJ|1|2|G|1574
8CBJ|1|2|G|1575
8CBJ|1|2|A|1576
8CBJ|1|2|A|1577

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain T

40S ribosomal protein S19-A

Chain l

non-specific serine/threonine protein kinase