J3_8CBJ_012

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8CBJ|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CBJ_012 not in the Motif Atlas

Geometric match to J3_8C3A_083

Geometric discrepancy: 0.0984

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

8CBJ|1|2|A|41
8CBJ|1|2|G|42
8CBJ|1|2|A|43
8CBJ|1|2|U|44
8CBJ|1|2|U|45
8CBJ|1|2|A|46
8CBJ|1|2|A|47
8CBJ|1|2|G|48
*
8CBJ|1|2|C|431
8CBJ|1|2|G|432
8CBJ|1|2|C|433
8CBJ|1|2|G|434
8CBJ|1|2|C|435
8CBJ|1|2|A|436
8CBJ|1|2|A|437
8CBJ|1|2|A|438
8CBJ|1|2|U|439
*
8CBJ|1|2|A|464
8CBJ|1|2|G|465
8CBJ|1|2|U|466

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9-A

Chain X

40S ribosomal protein S23-A

Chain k

TSR1 isoform 1