J3_8CCS_005

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8CCS|1|AA|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CCS_005 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0742

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8CCS|1|AA|U|1479
8CCS|1|AA|G|1480
8CCS|1|AA|A|1481
8CCS|1|AA|A|1482
8CCS|1|AA|G|1483
8CCS|1|AA|U|1484
8CCS|1|AA|G|1485
*
8CCS|1|AA|C|1857
8CCS|1|AA|A|1858
8CCS|1|AA|A|1859
*
8CCS|1|AA|U|1871
8CCS|1|AA|C|1872
8CCS|1|AA|U|1873
8CCS|1|AA|A|1874

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain S

60S ribosomal protein L34-A