J3_8CCS_008
3D structure
- PDB id
- 8CCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.97 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 8CCS|1|AA|G|2549, 8CCS|1|AA|U|2550, 8CCS|1|AA|U|2551, 8CCS|1|AA|A|2554, 8CCS|1|AA|U|2558, 8CCS|1|AA|U|2559, 8CCS|1|AA|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CCS_008 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.112
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CCS|1|AA|A|2529
8CCS|1|AA|G|2530
8CCS|1|AA|C|2531
8CCS|1|AA|U|2532
*
8CCS|1|AA|A|2547
8CCS|1|AA|C|2548
8CCS|1|AA|G|2549
8CCS|1|AA|U|2550
8CCS|1|AA|U|2551
8CCS|1|AA|C|2552
8CCS|1|AA|U|2553
8CCS|1|AA|A|2554
8CCS|1|AA|G|2555
8CCS|1|AA|C|2556
8CCS|1|AA|A|2557
8CCS|1|AA|U|2558
8CCS|1|AA|U|2559
8CCS|1|AA|C|2560
8CCS|1|AA|A|2561
8CCS|1|AA|A|2562
8CCS|1|AA|G|2563
*
8CCS|1|AA|U|2578
8CCS|1|AA|G|2579
8CCS|1|AA|A|2580
8CCS|1|AA|U|2581
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain EE
- 60S ribosomal protein L2-A
- Chain J
- 60S ribosomal protein L25
- Chain KK
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L27-A
- Chain O
- 60S ribosomal protein L30
- Chain S
- 60S ribosomal protein L34-A
- Chain b
- 60S ribosomal protein L43-A
- Chain e
- 40S ribosomal protein S1-A
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