J3_8CCS_019

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8CCS|1|c|A|1217, 8CCS|1|c|G|1445, 8CCS|1|c|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CCS_019 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.0863

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8CCS|1|c|C|1215
8CCS|1|c|C|1216
8CCS|1|c|A|1217
8CCS|1|c|G|1218
8CCS|1|c|A|1219
8CCS|1|c|C|1220
*
8CCS|1|c|G|1263
8CCS|1|c|G|1264
8CCS|1|c|G|1265
8CCS|1|c|U|1266
8CCS|1|c|G|1267
*
8CCS|1|c|U|1442
8CCS|1|c|U|1443
8CCS|1|c|A|1444
8CCS|1|c|G|1445
8CCS|1|c|A|1446
8CCS|1|c|C|1447
8CCS|1|c|G|1448

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A