J3_8CCS_024

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

8CCS|1|AA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CCS_024 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.0854

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8CCS|1|AA|C|185
8CCS|1|AA|U|186
8CCS|1|AA|A|187
8CCS|1|AA|U|188
8CCS|1|AA|G|189
*
8CCS|1|AA|C|205
8CCS|1|AA|G|206
8CCS|1|AA|U|207
8CCS|1|AA|C|208
8CCS|1|AA|A|209
8CCS|1|AA|U|210
8CCS|1|AA|A|211
8CCS|1|AA|G|212
8CCS|1|AA|A|213
8CCS|1|AA|G|214
*
8CCS|1|AA|C|226
8CCS|1|AA|G|227
8CCS|1|AA|U|228
8CCS|1|AA|G|229
8CCS|1|AA|U|230
8CCS|1|AA|G|231

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A