J3_8CDL_011

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8CDL|1|AA|A|2887, 8CDL|1|AA|U|2888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CDL_011 not in the Motif Atlas

Homologous match to J3_8C3A_011

Geometric discrepancy: 0.0656

The information below is about J3_8C3A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

8CDL|1|AA|U|2886
8CDL|1|AA|A|2887
8CDL|1|AA|U|2888
8CDL|1|AA|C|2889
*
8CDL|1|AA|G|2914
8CDL|1|AA|U|2915
8CDL|1|AA|U|2916
*
8CDL|1|AA|A|2930
8CDL|1|AA|C|2931
8CDL|1|AA|U|2932
8CDL|1|AA|A|2933
8CDL|1|AA|A|2934
8CDL|1|AA|U|2935
8CDL|1|AA|A|2936

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain A

60S ribosomal protein L16-A

Chain FF

60S ribosomal protein L3

Chain H

60S ribosomal protein L23-A