J3_8CDL_013
3D structure
- PDB id
- 8CDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDL_013 not in the Motif Atlas
- Homologous match to J3_4V88_032
- Geometric discrepancy: 0.1396
- The information below is about J3_4V88_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_54972.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CDL|1|c|A|760
8CDL|1|c|G|761
8CDL|1|c|A|762
8CDL|1|c|G|763
*
8CDL|1|c|C|773
8CDL|1|c|A|774
8CDL|1|c|G|775
*
8CDL|1|c|U|785
8CDL|1|c|C|786
8CDL|1|c|G|787
8CDL|1|c|A|788
8CDL|1|c|A|789
8CDL|1|c|U|790
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S24-A
- Chain h
- 40S ribosomal protein S4-A
- Chain m
- 40S ribosomal protein S9-A
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