J3_8CDL_019

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8CDL|1|c|A|1217, 8CDL|1|c|G|1445

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CDL_019 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1309

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8CDL|1|c|C|1215
8CDL|1|c|C|1216
8CDL|1|c|A|1217
8CDL|1|c|G|1218
8CDL|1|c|A|1219
8CDL|1|c|C|1220
*
8CDL|1|c|G|1263
8CDL|1|c|G|1264
8CDL|1|c|G|1265
8CDL|1|c|U|1266
8CDL|1|c|G|1267
*
8CDL|1|c|U|1442
8CDL|1|c|U|1443
8CDL|1|c|A|1444
8CDL|1|c|G|1445
8CDL|1|c|A|1446
8CDL|1|c|C|1447
8CDL|1|c|G|1448

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A