J3_8CDL_024

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

8CDL|1|AA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CDL_024 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.079

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75408.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8CDL|1|AA|C|185
8CDL|1|AA|U|186
8CDL|1|AA|A|187
8CDL|1|AA|U|188
8CDL|1|AA|G|189
*
8CDL|1|AA|C|205
8CDL|1|AA|G|206
8CDL|1|AA|U|207
8CDL|1|AA|C|208
8CDL|1|AA|A|209
8CDL|1|AA|U|210
8CDL|1|AA|A|211
8CDL|1|AA|G|212
8CDL|1|AA|A|213
8CDL|1|AA|G|214
*
8CDL|1|AA|C|226
8CDL|1|AA|G|227
8CDL|1|AA|U|228
8CDL|1|AA|G|229
8CDL|1|AA|U|230
8CDL|1|AA|G|231

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A