J3_8CDR_002
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- UGA(A2M)CUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8CDR|1|AA|G|924
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_002 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.0573
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8CDR|1|AA|U|814
8CDR|1|AA|G|815
8CDR|1|AA|A|816
8CDR|1|AA|A2M|817
8CDR|1|AA|C|818
8CDR|1|AA|U|819
8CDR|1|AA|A|820
*
8CDR|1|AA|U|905
8CDR|1|AA|A|906
8CDR|1|AA|G|907
*
8CDR|1|AA|C|923
8CDR|1|AA|G|924
8CDR|1|AA|A|925
8CDR|1|AA|A|926
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain EE
- 60S ribosomal protein L2-A
- Chain QQ
- 60S ribosomal protein L15-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
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