J3_8CDR_006
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8CDR|1|AA|U|1840, 8CDR|1|AA|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_006 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.0732
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CDR|1|AA|G|1488
8CDR|1|AA|A|1489
8CDR|1|AA|A|1490
8CDR|1|AA|A|1491
*
8CDR|1|AA|U|1837
8CDR|1|AA|G|1838
8CDR|1|AA|A|1839
8CDR|1|AA|U|1840
8CDR|1|AA|A|1841
8CDR|1|AA|A|1842
8CDR|1|AA|C|1843
*
8CDR|1|AA|G|1852
8CDR|1|AA|U|1853
8CDR|1|AA|C|1854
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain S
- 60S ribosomal protein L34-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
Coloring options: