J3_8CDR_022
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CACUG*CGUGCUGG*C(OMG)AG
- Length
- 17 nucleotides
- Bulged bases
- 8CDR|1|c|U|1473, 8CDR|1|c|G|1539
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_022 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.2333
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8CDR|1|c|C|1470
8CDR|1|c|A|1471
8CDR|1|c|C|1472
8CDR|1|c|U|1473
8CDR|1|c|G|1474
*
8CDR|1|c|C|1533
8CDR|1|c|G|1534
8CDR|1|c|U|1535
8CDR|1|c|G|1536
8CDR|1|c|C|1537
8CDR|1|c|U|1538
8CDR|1|c|G|1539
8CDR|1|c|G|1540
*
8CDR|1|c|C|1571
8CDR|1|c|OMG|1572
8CDR|1|c|A|1573
8CDR|1|c|G|1574
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S25-A
- Chain i
- 40S ribosomal protein S5
- Chain u
- 40S ribosomal protein S18-A
- Chain v
- 40S ribosomal protein S19-A
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