J3_8CDU_007
3D structure
- PDB id
- 8CDU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rnase R bound to a 30S degradation intermediate (main state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 8CDU|1|A|U|1249
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDU_007 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1884
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8CDU|1|A|C|1246
8CDU|1|A|A|1247
8CDU|1|A|A|1248
8CDU|1|A|U|1249
8CDU|1|A|G|1250
*
8CDU|1|A|C|1305
8CDU|1|A|U|1306
8CDU|1|A|C|1307
8CDU|1|A|A|1308
8CDU|1|A|G|1309
8CDU|1|A|U|1310
8CDU|1|A|U|1311
8CDU|1|A|C|1312
*
8CDU|1|A|G|1343
8CDU|1|A|C|1344
8CDU|1|A|U|1345
8CDU|1|A|G|1346
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
Coloring options: