J3_8CEU_016
3D structure
- PDB id
- 8CEU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Retapamulin and Capreomycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.83 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CEU_016 not in the Motif Atlas
- Homologous match to J3_5J7L_069
- Geometric discrepancy: 0.0353
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CEU|1|a|G|1424
8CEU|1|a|G|1425
8CEU|1|a|G|1426
8CEU|1|a|A|1427
8CEU|1|a|C|1428
8CEU|1|a|G|1429
*
8CEU|1|a|C|1564
8CEU|1|a|C|1565
*
8CEU|1|a|G|1568
8CEU|1|a|A|1569
8CEU|1|a|A|1570
8CEU|1|a|A|1571
8CEU|1|a|A|1572
8CEU|1|a|G|1573
8CEU|1|a|C|1574
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain H
- Capreomycin IA
- Chain I
- Capreomycin IA
- Chain c
- Large ribosomal subunit protein uL2
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