J3_8CF5_006
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8CF5|1|AA|U|1840, 8CF5|1|AA|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CF5_006 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0734
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CF5|1|AA|G|1488
8CF5|1|AA|A|1489
8CF5|1|AA|A|1490
8CF5|1|AA|A|1491
*
8CF5|1|AA|U|1837
8CF5|1|AA|G|1838
8CF5|1|AA|A|1839
8CF5|1|AA|U|1840
8CF5|1|AA|A|1841
8CF5|1|AA|A|1842
8CF5|1|AA|C|1843
*
8CF5|1|AA|G|1852
8CF5|1|AA|U|1853
8CF5|1|AA|C|1854
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain CC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain S
- 60S ribosomal protein L34-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
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