J3_8CF5_011
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8CF5|1|AA|A|2887, 8CF5|1|AA|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CF5_011 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.0615
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CF5|1|AA|U|2886
8CF5|1|AA|A|2887
8CF5|1|AA|U|2888
8CF5|1|AA|C|2889
*
8CF5|1|AA|G|2914
8CF5|1|AA|U|2915
8CF5|1|AA|U|2916
*
8CF5|1|AA|A|2930
8CF5|1|AA|C|2931
8CF5|1|AA|U|2932
8CF5|1|AA|A|2933
8CF5|1|AA|A|2934
8CF5|1|AA|U|2935
8CF5|1|AA|A|2936
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L16-A
- Chain FF
- 60S ribosomal protein L3
- Chain H
- 60S ribosomal protein L23-A
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