3D structure

PDB id
8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
Experimental method
ELECTRON MICROSCOPY
Resolution
2.71 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
8CF5|1|AA|A|2887, 8CF5|1|AA|U|2888
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CF5_011 not in the Motif Atlas
Homologous match to J3_8C3A_011
Geometric discrepancy: 0.0615
The information below is about J3_8C3A_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

8CF5|1|AA|U|2886
8CF5|1|AA|A|2887
8CF5|1|AA|U|2888
8CF5|1|AA|C|2889
*
8CF5|1|AA|G|2914
8CF5|1|AA|U|2915
8CF5|1|AA|U|2916
*
8CF5|1|AA|A|2930
8CF5|1|AA|C|2931
8CF5|1|AA|U|2932
8CF5|1|AA|A|2933
8CF5|1|AA|A|2934
8CF5|1|AA|U|2935
8CF5|1|AA|A|2936

Current chains

Chain AA
25S ribosomal RNA

Nearby chains

Chain A
60S ribosomal protein L16-A
Chain FF
60S ribosomal protein L3
Chain H
60S ribosomal protein L23-A

Coloring options:


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