J3_8CF5_016

3D structure

PDB id

8CF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.71 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CF5_016 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1194

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CF5|1|c|C|1161
8CF5|1|c|C|1162
8CF5|1|c|A|1163
8CF5|1|c|G|1164
*
8CF5|1|c|C|1581
8CF5|1|c|U|1582
8CF5|1|c|A|1583
8CF5|1|c|G|1584
8CF5|1|c|U|1585
8CF5|1|c|A|1586
8CF5|1|c|A|1587
*
8CF5|1|c|U|1609
8CF5|1|c|G|1610
8CF5|1|c|A|1611
8CF5|1|c|U|1612
8CF5|1|c|U|1613
8CF5|1|c|A|1614
8CF5|1|c|C|1615
8CF5|1|c|G|1616

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein S28-A

Chain i

40S ribosomal protein S5

Chain s

40S ribosomal protein S16-A