J3_8CF5_019
3D structure
- PDB id
- 8CF5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.71 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 8CF5|1|c|A|1217, 8CF5|1|c|G|1445, 8CF5|1|c|C|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CF5_019 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1006
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8CF5|1|c|C|1215
8CF5|1|c|C|1216
8CF5|1|c|A|1217
8CF5|1|c|G|1218
8CF5|1|c|A|1219
8CF5|1|c|C|1220
*
8CF5|1|c|G|1263
8CF5|1|c|G|1264
8CF5|1|c|G|1265
8CF5|1|c|U|1266
8CF5|1|c|G|1267
*
8CF5|1|c|U|1442
8CF5|1|c|U|1443
8CF5|1|c|A|1444
8CF5|1|c|G|1445
8CF5|1|c|A|1446
8CF5|1|c|C|1447
8CF5|1|c|G|1448
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 8
- Ubiquitin-40S ribosomal protein S31
- Chain Aa
- Elongation factor 2
- Chain n
- 40S ribosomal protein S10-A
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