J3_8CGD_003

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

8CGD|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGD_003 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0568

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8CGD|1|a|C|1298
8CGD|1|a|G|1299
8CGD|1|a|G|1300
8CGD|1|a|A|1301
8CGD|1|a|A|1302
8CGD|1|a|G|1303
*
8CGD|1|a|C|1625
8CGD|1|a|A|1626
8CGD|1|a|G|1627
*
8CGD|1|a|C|1639
8CGD|1|a|A|1640
8CGD|1|a|A|1641
8CGD|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains