J3_8CGD_004

3D structure

PDB id

8CGD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Clindamycin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.98 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8CGD|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGD_004 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1248

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8CGD|1|a|C|1306
8CGD|1|a|A|1307
8CGD|1|a|A|1308
8CGD|1|a|G|1309
*
8CGD|1|a|C|1605
8CGD|1|a|C|1606
8CGD|1|a|C|1607
8CGD|1|a|A|1608
8CGD|1|a|A|1609
8CGD|1|a|A|1610
8CGD|1|a|C|1611
*
8CGD|1|a|G|1620
8CGD|1|a|U|1621
8CGD|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34