J3_8CGD_009
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 8CGD|1|b|U|14, 8CGD|1|b|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGD_009 not in the Motif Atlas
- Homologous match to J3_7A0S_014
- Geometric discrepancy: 0.3353
- The information below is about J3_7A0S_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_13944.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CGD|1|b|G|10
8CGD|1|b|C|11
8CGD|1|b|C|12
8CGD|1|b|G|13
8CGD|1|b|U|14
8CGD|1|b|A|15
8CGD|1|b|G|16
*
8CGD|1|b|C|68
8CGD|1|b|G|69
8CGD|1|b|C|70
*
8CGD|1|b|G|106
8CGD|1|b|G|107
8CGD|1|b|A|108
8CGD|1|b|A|109
8CGD|1|b|C|110
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain n
- Large ribosomal subunit protein uL18
- Chain u
- 50S ribosomal protein L25
- Chain v
- Large ribosomal subunit protein bL27
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