J3_8CGD_011
3D structure
- PDB id
- 8CGD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Clindamycin bound to the 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.98 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 8CGD|1|a|A|504, 8CGD|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGD_011 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0807
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8CGD|1|a|G|30
8CGD|1|a|C|31
*
8CGD|1|a|G|474
8CGD|1|a|C|475
8CGD|1|a|G|476
8CGD|1|a|A|477
8CGD|1|a|A|478
8CGD|1|a|A|479
8CGD|1|a|A|480
8CGD|1|a|G|481
8CGD|1|a|A|482
8CGD|1|a|A|483
8CGD|1|a|C|484
*
8CGD|1|a|G|496
8CGD|1|a|A|497
8CGD|1|a|G|498
8CGD|1|a|U|499
8CGD|1|a|G|500
8CGD|1|a|A|501
8CGD|1|a|A|502
8CGD|1|a|A|503
8CGD|1|a|A|504
8CGD|1|a|A|505
8CGD|1|a|G|506
8CGD|1|a|A|507
8CGD|1|a|A|508
8CGD|1|a|C|509
8CGD|1|a|C|510
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain p
- Large ribosomal subunit protein bL20
- Chain r
- Large ribosomal subunit protein uL22
- Chain t
- Large ribosomal subunit protein uL24
Coloring options: