J3_8CGJ_003

3D structure

PDB id

8CGJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Streptomycin bound to the 30S body

Experimental method

ELECTRON MICROSCOPY

Resolution

1.79 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8CGJ|1|A|C|48, 8CGJ|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGJ_003 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0541

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8CGJ|1|A|G|46
8CGJ|1|A|C|47
8CGJ|1|A|C|48
8CGJ|1|A|U|49
8CGJ|1|A|A|50
8CGJ|1|A|A|51
8CGJ|1|A|C|52
*
8CGJ|1|A|G|359
8CGJ|1|A|G|360
8CGJ|1|A|G|361
8CGJ|1|A|G|362
8CGJ|1|A|A|363
8CGJ|1|A|A|364
8CGJ|1|A|U|365
8CGJ|1|A|A|366
8CGJ|1|A|U|367
*
8CGJ|1|A|A|393
8CGJ|1|A|G|394
8CGJ|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain P

30S ribosomal protein S16