3D structure

PDB id
8CGJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
1.79 Å

Loop

Sequence
CGG*CUUGA*UGACG
Length
13 nucleotides
Bulged bases
8CGJ|1|A|U|653
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CGJ_005 not in the Motif Atlas
Homologous match to J3_5J7L_051
Geometric discrepancy: 0.0615
The information below is about J3_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.4
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
6

Unit IDs

8CGJ|1|A|C|586
8CGJ|1|A|G|587
8CGJ|1|A|G|588
*
8CGJ|1|A|C|651
8CGJ|1|A|U|652
8CGJ|1|A|U|653
8CGJ|1|A|G|654
8CGJ|1|A|A|655
*
8CGJ|1|A|U|751
8CGJ|1|A|G|752
8CGJ|1|A|A|753
8CGJ|1|A|C|754
8CGJ|1|A|G|755

Current chains

Chain A
16S rRNA

Nearby chains

Chain H
Small ribosomal subunit protein uS8
Chain L
Small ribosomal subunit protein uS12
Chain O
Small ribosomal subunit protein uS15
Chain Q
Small ribosomal subunit protein uS17

Coloring options:


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