J3_8CGN_016
3D structure
- PDB id
- 8CGN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Non-rotated 80S S. cerevisiae ribosome with ligands
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.28 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CGN_016 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1106
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CGN|1|c|C|1161
8CGN|1|c|C|1162
8CGN|1|c|A|1163
8CGN|1|c|G|1164
*
8CGN|1|c|C|1581
8CGN|1|c|U|1582
8CGN|1|c|A|1583
8CGN|1|c|G|1584
8CGN|1|c|U|1585
8CGN|1|c|A|1586
8CGN|1|c|A|1587
*
8CGN|1|c|U|1609
8CGN|1|c|G|1610
8CGN|1|c|A|1611
8CGN|1|c|U|1612
8CGN|1|c|U|1613
8CGN|1|c|A|1614
8CGN|1|c|C|1615
8CGN|1|c|G|1616
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein S28-A
- Chain Cc
- Transfer RNA; tRNA
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
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