J3_8CGN_019

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

8CGN|1|c|A|1217, 8CGN|1|c|G|1445, 8CGN|1|c|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGN_019 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1035

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

8CGN|1|c|C|1215
8CGN|1|c|C|1216
8CGN|1|c|A|1217
8CGN|1|c|G|1218
8CGN|1|c|A|1219
8CGN|1|c|C|1220
*
8CGN|1|c|G|1263
8CGN|1|c|G|1264
8CGN|1|c|G|1265
8CGN|1|c|U|1266
8CGN|1|c|G|1267
*
8CGN|1|c|U|1442
8CGN|1|c|U|1443
8CGN|1|c|A|1444
8CGN|1|c|G|1445
8CGN|1|c|A|1446
8CGN|1|c|C|1447
8CGN|1|c|G|1448

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 5

HLJ1_G0030400.mRNA.1.CDS.1

Chain 8

Ubiquitin-40S ribosomal protein S31

Chain n

40S ribosomal protein S10-A