J3_8CGN_024

3D structure

PDB id

8CGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated 80S S. cerevisiae ribosome with ligands

Experimental method

ELECTRON MICROSCOPY

Resolution

2.28 Å

Loop

Sequence

CUAUG*CGUCAUAGAG*CGUGUG

Length

21 nucleotides

Bulged bases

8CGN|1|AA|U|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGN_024 not in the Motif Atlas

Homologous match to J3_8P9A_044

Geometric discrepancy: 0.0903

The information below is about J3_8P9A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97456.1

Basepair signature

cWW-cWW-F-F-cSS-cSW-cWW-tHS-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8CGN|1|AA|C|185
8CGN|1|AA|U|186
8CGN|1|AA|A|187
8CGN|1|AA|U|188
8CGN|1|AA|G|189
*
8CGN|1|AA|C|205
8CGN|1|AA|G|206
8CGN|1|AA|U|207
8CGN|1|AA|C|208
8CGN|1|AA|A|209
8CGN|1|AA|U|210
8CGN|1|AA|A|211
8CGN|1|AA|G|212
8CGN|1|AA|A|213
8CGN|1|AA|G|214
*
8CGN|1|AA|C|226
8CGN|1|AA|G|227
8CGN|1|AA|U|228
8CGN|1|AA|G|229
8CGN|1|AA|U|230
8CGN|1|AA|G|231

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain GG

60S ribosomal protein L4-A

Chain K

60S ribosomal protein L26-A