3D structure

PDB id
8CGR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Apramycin bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.12 Å

Loop

Sequence
GCCUAAC*GGGGAAUAU*AGC
Length
19 nucleotides
Bulged bases
8CGR|1|A|C|48, 8CGR|1|A|A|51
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CGR_003 not in the Motif Atlas
Homologous match to J3_5J7L_050
Geometric discrepancy: 0.0625
The information below is about J3_5J7L_050
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CGR|1|A|G|46
8CGR|1|A|C|47
8CGR|1|A|C|48
8CGR|1|A|U|49
8CGR|1|A|A|50
8CGR|1|A|A|51
8CGR|1|A|C|52
*
8CGR|1|A|G|359
8CGR|1|A|G|360
8CGR|1|A|G|361
8CGR|1|A|G|362
8CGR|1|A|A|363
8CGR|1|A|A|364
8CGR|1|A|U|365
8CGR|1|A|A|366
8CGR|1|A|U|367
*
8CGR|1|A|A|393
8CGR|1|A|G|394
8CGR|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
Small ribosomal subunit protein uS12
Chain P
30S ribosomal protein S16

Coloring options:


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