J3_8CGV_007

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

CUA*UAG*CAUAAG

Length

12 nucleotides

Bulged bases

8CGV|1|a|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGV_007 not in the Motif Atlas

Homologous match to J3_5J7L_045

Geometric discrepancy: 0.1234

The information below is about J3_5J7L_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_61124.2

Basepair signature

cWW-tWH-tWW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

8CGV|1|a|C|2295
8CGV|1|a|U|2296
8CGV|1|a|A|2297
*
8CGV|1|a|U|2321
8CGV|1|a|A|2322
8CGV|1|a|G|2323
*
8CGV|1|a|C|2332
8CGV|1|a|A|2333
8CGV|1|a|U|2334
8CGV|1|a|A|2335
8CGV|1|a|A|2336
8CGV|1|a|G|2337

Current chains

Chain a

23S rRNA

Nearby chains

Chain n

Large ribosomal subunit protein uL18

Chain v

Large ribosomal subunit protein bL27