J3_8CGV_016

3D structure

PDB id

8CGV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tiamulin bound to the 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.66 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CGV_016 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.0351

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8CGV|1|a|G|1424
8CGV|1|a|G|1425
8CGV|1|a|G|1426
8CGV|1|a|A|1427
8CGV|1|a|C|1428
8CGV|1|a|G|1429
*
8CGV|1|a|C|1564
8CGV|1|a|C|1565
*
8CGV|1|a|G|1568
8CGV|1|a|A|1569
8CGV|1|a|A|1570
8CGV|1|a|A|1571
8CGV|1|a|A|1572
8CGV|1|a|G|1573
8CGV|1|a|C|1574

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2