J3_8CIV_004

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CIV_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.1755

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

8CIV|1|AA|G|1230
8CIV|1|AA|A|1231
8CIV|1|AA|C|1232
*
8CIV|1|AA|G|1256
8CIV|1|AA|C|1257
8CIV|1|AA|U|1258
8CIV|1|AA|A|1259
8CIV|1|AA|A|1260
8CIV|1|AA|G|1261
8CIV|1|AA|G|1262
*
8CIV|1|AA|C|1277
8CIV|1|AA|A|1278
8CIV|1|AA|C|1279

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain DD

60S acidic ribosomal protein P0

Chain Ee

60S ribosomal protein L12-A