J3_8CIV_016

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8CIV|1|c|C|1161
8CIV|1|c|C|1162
8CIV|1|c|A|1163
8CIV|1|c|G|1164
*
8CIV|1|c|C|1581
8CIV|1|c|U|1582
8CIV|1|c|A|1583
8CIV|1|c|G|1584
8CIV|1|c|U|1585
8CIV|1|c|A|1586
8CIV|1|c|A|1587
*
8CIV|1|c|U|1609
8CIV|1|c|G|1610
8CIV|1|c|A|1611
8CIV|1|c|U|1612
8CIV|1|c|U|1613
8CIV|1|c|A|1614
8CIV|1|c|C|1615
8CIV|1|c|G|1616

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain 4

40S ribosomal protein S28-A

Chain i

40S ribosomal protein S5

Chain s

40S ribosomal protein S16-A