J3_8CIV_040

3D structure

PDB id

8CIV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AGU

Length

20 nucleotides

Bulged bases

8CIV|1|c|A|47

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CIV_040 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0609

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CIV|1|c|A|41
8CIV|1|c|G|42
8CIV|1|c|A|43
8CIV|1|c|U|44
8CIV|1|c|U|45
8CIV|1|c|A|46
8CIV|1|c|A|47
8CIV|1|c|G|48
*
8CIV|1|c|C|431
8CIV|1|c|G|432
8CIV|1|c|C|433
8CIV|1|c|G|434
8CIV|1|c|C|435
8CIV|1|c|A2M|436
8CIV|1|c|A|437
8CIV|1|c|A|438
8CIV|1|c|U|439
*
8CIV|1|c|A|464
8CIV|1|c|G|465
8CIV|1|c|U|466

Current chains

Chain c

18S ribosomal RNA

Nearby chains

Chain Aa

Elongation factor 2

Chain m

40S ribosomal protein S9-A

Chain z

40S ribosomal protein S23-A