J3_8CKU_014
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8CKU|1|c|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CKU_014 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1414
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CKU|1|c|C|1037
8CKU|1|c|U|1038
8CKU|1|c|A|1039
*
8CKU|1|c|U|1079
8CKU|1|c|U|1080
8CKU|1|c|A|1081
8CKU|1|c|C|1082
8CKU|1|c|G|1083
*
8CKU|1|c|C|1090
8CKU|1|c|A|1091
8CKU|1|c|A|1092
8CKU|1|c|A|1093
8CKU|1|c|G|1094
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S26
- Chain 3
- 40S ribosomal protein S27-A
- Chain d
- 40S ribosomal protein S0-A
- Chain x
- 40S ribosomal protein S21-A
- Chain y
- 40S ribosomal protein S22-A
- Chain z
- 40S ribosomal protein S23-A
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