J3_8CKU_023
3D structure
- PDB id
- 8CKU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.11 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8CKU|1|AA|U|343, 8CKU|1|AA|A|351, 8CKU|1|CC|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CKU_023 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0665
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8CKU|1|AA|C|340
8CKU|1|AA|G|341
8CKU|1|AA|A|342
8CKU|1|AA|U|343
8CKU|1|AA|A|344
8CKU|1|AA|G|345
8CKU|1|AA|C|346
8CKU|1|AA|G|347
8CKU|1|AA|A|348
8CKU|1|AA|A|349
8CKU|1|AA|C|350
8CKU|1|AA|A|351
8CKU|1|AA|A|352
8CKU|1|AA|G|353
8CKU|1|AA|U|354
8CKU|1|AA|A|355
8CKU|1|AA|C|356
*
8CKU|1|AA|G|363
8CKU|1|AA|G|364
8CKU|1|AA|A|365
8CKU|1|AA|A|366
8CKU|1|AA|A|367
8CKU|1|AA|G|368
*
8CKU|1|CC|C|21
8CKU|1|CC|U|22
8CKU|1|CC|U|23
8CKU|1|CC|G|24
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L26-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
Coloring options: