J3_8CKU_027

3D structure

PDB id

8CKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translocation intermediate 1 (TI-1*) of 80S S. cerevisiae ribosome with ligands and eEF2 in the absence of sordarin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UAG*CGUA(OMG)*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CKU_027 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1377

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8CKU|1|AA|U|829
8CKU|1|AA|A|830
8CKU|1|AA|G|831
*
8CKU|1|AA|C|863
8CKU|1|AA|G|864
8CKU|1|AA|U|865
8CKU|1|AA|A|866
8CKU|1|AA|OMG|867
*
8CKU|1|AA|U|892
8CKU|1|AA|C|893
8CKU|1|AA|G|894
8CKU|1|AA|A|895

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain EE

60S ribosomal protein L2-A

Chain S

60S ribosomal protein L34-A